YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7494400
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICSNLSLLR YVHLVYYFII ISFCIHNNIS CFNVNLTKTN EDANIIRLNK LISMKRNISR  60
   61 RKSDEFIKDG KVKINNKIIT NPGTHVHIGK DSLRIYDKKI KLTNIINMIK QNENKLHKWI 120
  121 VLHKPKGLLC TSNDEKNRKS IYTLFPEEML QKYRLVTVGR LDRNTSGVLL LTNDYAWVNK 180
  181 LTHPKYQRIR TYRVHIEGPV KMNALKELAR GIYLEEDEKT QPKKIYNYKE SREKSNIDDK 240
  241 KKKKMSKMKK KTNPAFIEIL REEKIKIKED TKKITVLNIS IKEGRNRQIR KMFQQINQPV 300
  301 IKIKRTSFEN ITLKNIYFPK QYRELNQKEV NDLKLRNF

Type	Start	End	Confidence
Cytoplasmic	1	8	0.51
Transmembrane Helix	9	26	0.53
Non-Cytoplasmic	27	338	0.95