YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7494364
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKNTLKRRS RLLQKNEARM SMLLGRNLDD EISKEKKESN KNDKHKKNDQ HKKNDKSNQN  60
   61 GEDNQNGEDN QNDESNQNDE HKKNDEHKKN DEHNQNDEHN QNDEHNQNDE HNQNDEHNQN 120
  121 DEHNQNDEHN QNDEHNQNDE SNQNDKNRKE IPPKEEKDKE NNPSVVMENN NNIRKDQDNK 180
  181 TSEHKSSTNI YNKDKNNDYN KLLDKDDNNN NNKNINKNDE NDFTSINNDI PNKNKITSQF 240
  241 IITKHEKLHF IILIILCIFI SIFKVYYNNK NNLIYKKKKK GNNNLNIVQM IFFNFINSPN 300
  301 FFFSFSVFYN ILFLLIIMLM YIKKNNITRK RIQDFFVNMK NKLNNQNEHV FYFINNAVLC 360
  361 ILFMGRIFKS YIISMFLINL FHDILHNYLI GVSMLQPQKV VLL

Type	Start	End	Confidence
Cytoplasmic	1	247	0.85
Transmembrane Helix	248	267	0.92
Non-Cytoplasmic	268	300	0.85
Transmembrane Helix	301	322	0.94
Cytoplasmic	323	366	0.77
Transmembrane Helix	367	386	0.55
Non-Cytoplasmic	387	403	0.66