YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7494412
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNYTKILL FFFPLNILAN NNKNKPSITQ RHTPRYTSRV LSECDIRSSI YDNDAEMKSV  60
   61 KETFDRQTSQ RFEEYEERMK GKRQKRKEQR DKNIQEIIEK DRMDKSLAEK VEKVCLRCGF 120
  121 GLGGVAAGVG IFGAIAVNEW TKAALVAAAQ KGIDAGIKSA LKGLEKIYEL SDFSYLKWSA 180
  181 MVTPTTYDQP MDLIAIVTKA YNMCDDVEAA KGSLFCQAME GIANEPDGCP VKTFSQMAVD 240
  241 AAEAAGKVSK TTEEAGIALA NNTSYNSYIA IAYSVTAILI IVLIMLIIYL ILRYRRKKKM 300
  301 NKKLQYTKLL NQ

Type	Start	End	Confidence
Cytoplasmic	1	113	0.75
Transmembrane Helix	114	136	0.69
Non-Cytoplasmic	137	268	0.99
Transmembrane Helix	269	292	0.94
Cytoplasmic	293	312	0.98