YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7494408
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMYYLKMLL FTFLINTLVA RHYENFVNNH YNVSLIQNKT KRVTIKSRLL AQTQIHNPHY  60
   61 HNDPELKEII DKMNEEAIKK YQQTHDPYKQ LKEVVEKNGS QNRSGHVAEP MSTLEKELLE 120
  121 TYVETFGEES NIMLKSGRYQ NGDDVSDDSS SCDCTDINNA KLEKTKGRDK YLKHLKGRCT 180
  181 RGIYFCSAGS ALLTLIALIA AKKAALSAVA SYAGFKNCMS SIATFKLLDS STLLSSFLSM 240
  241 KACVVGATDM AGTIATPAMA AFYPYGIAAL VLLILAVVLI ILYIWLYRRR KHSWKHECKK 300
  301 HLCK

Type	Start	End	Confidence
Cytoplasmic	1	181	0.80
Transmembrane Helix	182	201	0.91
Non-Cytoplasmic	202	207	0.62
Transmembrane Helix	208	228	0.55
Cytoplasmic	229	236	0.58
Transmembrane Helix	237	256	0.65
Non-Cytoplasmic	257	264	0.68
Transmembrane Helix	265	287	0.93
Cytoplasmic	288	304	0.99