YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7494407
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.66
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLNYTNILL FYLSLNILSS SSEVYNQRNH YITRTPKATT RTLCECELYA PSNYDNDPEM  60
   61 QKVMENYNRQ TSQRFEEYNE RVIKNRQKCK EQCDKEIQKI ILKDKLEKEL MNKFATLQTD 120
  121 IQSDAIPTCV CEKSVADKVE KTCLKCGGVL GSGIAPSVGL LGTVAIDQWT NAALLDAAQK 180
  181 GIQAGIDTVV AELEYVAERF DDIGINIVGM INKETYRCPQ ALIESIYAAK QKVCDNVGNP 240
  241 APTCHRVGQD GTSIWFRPEV LKATQDGIDA AETVEKAEIV LINEESAHLY SAIGYSVLAI 300
  301 LIIVLVMLII YLILRYRRKK KMKKKLQYIK LLEE

Type	Start	End	Confidence
Signal Peptide	1	22	0.65
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	291	0.96
Transmembrane Helix	292	314	0.96
Cytoplasmic	315	334	0.97