YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPT_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPALGTLSGG AAGVAGLLRL RRATPSPAVA TPFPAAAAAR CAAAAAAVVP DGGQLVWGRQ  60
   61 LRPALLLPAA GGLLQPPTSP SSSQAGRRQA LRPPAAATSG EAKPAGFLEK YPALITGFFF 120
  121 FMWYFLNVIF NILNKKIYNY FPYPYFVSVI HLLVGVVYCL VSWTVGLPKR APINSTLLKL 180
  181 LFPVALCHAL GHVTSNVSFA TVAVSFAHTI KALEPFFNAA ATQFVLGQQV PLPLWLSLAP 240
  241 VVLGVSMASL TELSFNWTGF INAMISNISF TYRSIYSKKA MTDMDSTNVY AYISIIALIV 300
  301 CIPPAVIIEG PQLLQHGFND AIAKVGLTKF VSDLFFVGLF YHLYNQVATN TLERVAPLTH 360
  361 AVGNVLKRVF VIGFSIIVFG NRITTQTGIG TCIAIAGVAI YSYIKAKIEE EKRAKSA

Type	Start	End	Confidence
Cytoplasmic	1	110	0.59
Transmembrane Helix	111	133	0.85
Non-Cytoplasmic	134	144	0.60
Transmembrane Helix	145	167	0.89
Cytoplasmic	168	179	0.57
Transmembrane Helix	180	207	0.69
Non-Cytoplasmic	208	233	0.51
Transmembrane Helix	234	268	0.67
Cytoplasmic	269	287	0.68
Transmembrane Helix	288	308	0.94
Non-Cytoplasmic	309	324	0.80
Transmembrane Helix	325	344	0.62
Cytoplasmic	345	363	0.43
Transmembrane Helix	364	379	0.55
Non-Cytoplasmic	380	382	0.75
Transmembrane Helix	383	404	0.87
Cytoplasmic	405	417	0.91