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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CCA11_ORYSJ
Protein type: Globular with Signal Peptide
Type Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNLAASRR SSSSSSVAAA AAAKRPAVGE GGGGGGGKAA AGAAAAKKRV ALSNISNVAA  60
   61 GGGAPGKAGN AKLNLAASAA PVKKGSLASG RNVGTNRASA VKSASAKPAP AISRHESATQ 120
  121 KESVLPPKVP SIVPTAALAP VTVPCSSFVS PMHSGDSVSV DETMSTCDSM KSPEFEYIDN 180
  181 GDSSSVLGSL QRRANENLRI SEDRDVEETK WKKDAPSPME IDQICDVDNN YEDPQLCATL 240
  241 ASDIYMHLRE AETRKRPSTD FMETIQKDVN PSMRAILIDW LVEVAEEYRL VPDTLYLTVN 300
  301 YIDRYLSGNE INRQRLQLLG VACMLIAAKY EEICAPQVEE FCYITDNTYF RDEVLEMEAS 360
  361 VLNYLKFEVT APTAKCFLRR FVRVAQVSDE DPALHLEFLA NYVAELSLLE YNLLSYPPSL 420
  421 VAASAIFLAK FILQPTKHPW NSTLAHYTQY KSSELSDCVK ALHRLFSVGP GSNLPAIREK 480
  481 YTQHKYKFVA KKPCPPSIPT EFFRDATC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle