YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|222618026, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLWRWYQQ CLATHPVRTQ VVSSGILWGL GDIGAQAVTH YSAPGRPRHH QHHAKNPPED  60
   61 KDKEFKIDWK RVGITSSFGF AFVGPVGHYW YEYLDRFILR RYQPKTFKFV ASKVAADGLL 120
  121 FGPVDLLLFF SYVGLASGRS VEQVKDDVKR DFIPALVLGG TIWPAVQIAN FRFIPVRYQL 180
  181 LYVNLFCLLD SCFLSWIDQQ GDAPWKQWFT SFQKIEGQKG KV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	40	0.60
Non-Cytoplasmic	41	71	0.65
Transmembrane Helix	72	91	0.81
Cytoplasmic	92	113	0.54
Transmembrane Helix	114	136	0.73
Non-Cytoplasmic	137	151	0.59
Transmembrane Helix	152	171	0.69
Cytoplasmic	172	179	0.46
Transmembrane Helix	180	197	0.56
Non-Cytoplasmic	198	222	0.57