YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PANB2_ORYSJ
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSRLLTPR ILLDTTAVFP PSSSVVAPSL SRQLRCTRTG GSPPAPPHRL VARRAMSNGA  60
   61 AEPAIYGGGG GAQQAASSAA ARRVTLATLR GKHRRGEPIS MVTAYDYPSG VHVDAAGFDI 120
  121 CLVGDSAAMV AHGHDNTLPI SLDLMIEHCR AVARGAARTF LVGDLPFGSY EASTAQAVGS 180
  181 AVRVMKEGGV NSIKLEGSAP SRISAARAIV DAGIAVMGHI GLTPQSVSAL GGFRPQGKTV 240
  241 ESAVKVVEAA LALQEAGCFA VVLECVPAPV AAAATSALTI PTIGIGAGPF CSGQVLVYHD 300
  301 LLGTFQTSHA KVSPKFCKQY GNIGDVINRA LSKYKQEVET QSFPGPSHTP YKLAATDVDA 360
  361 FLNALKMKGL NVAADAAADA VEYTDEKEIN GTPQLKVYA

Type	Start	End	Confidence
Signal Peptide	1	27	0.81
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	399	0.96