YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115435974, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSAMELSL LNPAAMRGLS AAKPRVVSSR RIVRFRVASS AAAPPAAKPG TPKKRGKTEI  60
   61 QETLLTPRFY TTDFDEMERL FNAEINKQLN QEEFDALLQE FKTDYNQTHF VRNPEFKAAA 120
  121 DKMEGPLRQI FVEFLERSCT AEFSGFLLYK ELGRRLKKTN PVVAEIFSLM SRDEARHAGF 180
  181 LNKGLSDFNL ALDLGFLTKA RKYTFFKPKF IFYATYLSEK IGYWRYITIF RHLKANPEYQ 240
  241 VYPIFKYFEN WCQDENRHGD FFSALLKAQP QFLNDWKAKL WSRFFCLSVY VTMYLNDCQR 300
  301 TTFYEGIGLD TKEFDMHVII ETNRTTARIF PAVLDVENPE FKRKLDRMVE INKKIIAIGE 360
  361 SDDIPLVKNL KRIPHVAALV SEIIAAYLMP PIESGSVDFA EFEPQLVY

Type	Start	End	Confidence
Signal Peptide	1	21	0.66
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	408	0.99