YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRT_PLAFA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.98
Transmembrane Helix	59	79	0.95
Non-Cytoplasmic	80	95	0.84
Transmembrane Helix	96	113	0.95
Cytoplasmic	114	125	0.91
Transmembrane Helix	126	148	0.91
Non-Cytoplasmic	149	154	0.83
Transmembrane Helix	155	175	0.91
Cytoplasmic	176	180	0.85
Transmembrane Helix	181	202	0.90
Non-Cytoplasmic	203	209	0.90
Transmembrane Helix	210	230	0.93
Cytoplasmic	231	244	0.87
Transmembrane Helix	245	266	0.86
Non-Cytoplasmic	267	314	0.85
Transmembrane Helix	315	333	0.59
Cytoplasmic	334	342	0.54
Transmembrane Helix	343	364	0.80
Non-Cytoplasmic	365	374	0.76
Transmembrane Helix	375	394	0.86
Cytoplasmic	395	424	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFASKKNNQ KNSSKNDERY RELDNLVQEG NGSRLGGGSC LGKCAHVFKL IFKEIKDNIF  60
   61 IYILSIIYLS VCVMNKIFAK RTLNKIGNYS FVTSETHNFI CMIMFFIVYS LFGNKKGNSK 120
  121 ERHRSFNLQF FAISMLDACS VILAFIGLTR TTGNIQSFVL QLSIPINMFF CFLILRYRYH 180
  181 LYNYLGAVII VVTIALVEMK LSFETQEENS IIFNLVLISA LIPVCFSNMT REIVFKKYKI 240
  241 DILRLNAMVS FFQLFTSCLI LPVYTLPFLK QLHLPYNEIW TNIKNGFACL FLGRNTVVEN 300
  301 CGLGMAKLCD DCDGAWKTFA LFSFFNICDN LITSYIIDKF STMTYTIVSC IQGPAIAIAY 360
  361 YFKFLAGDVV REPRLLDFVT LFGYLFGSII YRVGNIILER KKMRNEENED SEGELTNVDS 420
  421 IITQ