YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14090211, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.93
Transmembrane Helix	17	35	0.95
Non-Cytoplasmic	36	47	0.71
Transmembrane Helix	48	67	0.95
Cytoplasmic	68	75	0.91
Transmembrane Helix	76	98	0.88
Non-Cytoplasmic	99	109	0.74
Transmembrane Helix	110	130	0.91
Cytoplasmic	131	139	0.92
Transmembrane Helix	140	160	0.93
Non-Cytoplasmic	161	179	0.88
Transmembrane Helix	180	202	0.90
Cytoplasmic	203	215	0.80
Transmembrane Helix	216	236	0.94
Non-Cytoplasmic	237	252	0.92
Transmembrane Helix	253	273	0.95
Cytoplasmic	274	279	0.86
Transmembrane Helix	280	301	0.91
Non-Cytoplasmic	302	305	0.85
Transmembrane Helix	306	325	0.93
Cytoplasmic	326	374	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRDQAAAAV MHEKVKLFIG VLALQFLLAG FHIVSRAALN MGISKIVFIV YRNLISLALL  60
   61 APFAYFLEKK DRPPLTFSLL VEFFLLALCG ITANQGFYLL GLYHLSPTYA SAIQNTVPAI 120
  121 TFAMAAVLRL EQVDLGKRHG VAKVVGTVVS IGGATVITLY KGLPLFNHNL NIKSLSSSSL 180
  181 ILNWTLGCVF ILGHCLSWSG WMVLQVPVLK RYPARLSVLS LTCIFGLLQF LVIAAFTEED 240
  241 LSRWKVNSGS ELFTILYAGL VASGVAFALQ IWCIDRGGPL FTAVFQPVQT VAVAVMAAII 300
  301 LGDQLYSGGI IGAVLIVIGL YFVLWGKSEE KKSKNNNLQD QPVQGGGDDI RRHLLGQEDA 360
  361 SRKDEEAAVT DELA