YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PQLC1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEGLGWLL VPLHQLVSWV AAGAMVFGGV VPYIPQYRDI RRTQNADGFS THVCLVLLVA  60
   61 NILRILFWFG RHFESPLLWQ SIVMILTMLL MLKLCTEVRV ANELNIKRRS FAATDSKDEE 120
  121 LRVPPRRPYL DFDPHHFWHW SSFSDYVQCV LAFTGVAGYI TYLSIDSALF VETLGFLAVL 180
  181 TEAMLGVPQL YRNYCHRSTE GMSLKMVLMW TSGDTFKTAY FLLNGAPLQF SVCGLLQVMV 240
  241 DLVILGQAYA FAHHPQKPAA HAVHPASTKA L

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.89
Transmembrane Helix	15	35	0.92
Cytoplasmic	36	47	0.87
Transmembrane Helix	48	68	0.94
Non-Cytoplasmic	69	76	0.80
Transmembrane Helix	77	96	0.92
Cytoplasmic	97	143	0.89
Transmembrane Helix	144	163	0.80
Non-Cytoplasmic	164	168	0.61
Transmembrane Helix	169	191	0.64
Cytoplasmic	192	206	0.62
Transmembrane Helix	207	223	0.35
Non-Cytoplasmic	224	227	0.36
Transmembrane Helix	228	251	0.55
Cytoplasmic	252	271	0.66