YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33876506
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAMQIQTSS SQTSPEEAMG TPRIQHLLIL LVLGASLLTS GLELYCQKGL SMTVEADPAN  60
   61 MFNWTTEEVE TCDKGALCQE TILIIKAGTE TAILATKGCI PEGEEAITIV QHSSPPGLIV 120
  121 TSYSNYCEDS FCNDKDSLSQ FWEFSETTAS TVSTTLHCPT CVALGTCFSA PSLPCPNGTT 180
  181 RCYQGKLEIT GGGIESSVEV KGCTAMIGCR LMSGILAVGP MFVREACPHQ LLTQPRKTEN 240
  241 GATCLPIPVW GLQLLLPLLL PSFIHFS

Type	Start	End	Confidence
Cytoplasmic	1	23	0.37
Transmembrane Helix	24	42	0.52
Non-Cytoplasmic	43	267	0.51