YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18311354, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKDITIGQY IPGDSFVHKL DPRTKILISF IFIASLFIVD KFWGYIFIIA FLGATVLISK  60
   61 LQFKYLYKGL KPVFLLIAIT AALNIFMIKG TEDTLIWHWK FLYIYKEGIR TAIFMALRLI 120
  121 LLIMGTSVLT LTTSPIELTD GIESLLKPFK KIGVPAHELA MMMTIALRFI PTLIDETDKI 180
  181 MKAQKARGAD FESGNIIQKA KSLIPLLIPL FISSFRRADE LAMAMEARCY RGGDGRTRMK 240
  241 ILKYSKNDFI SFGMAGVLLV LSIVVRVF

Type	Start	End	Confidence
Cytoplasmic	1	25	0.76
Transmembrane Helix	26	59	0.69
Non-Cytoplasmic	60	68	0.45
Transmembrane Helix	69	91	0.84
Cytoplasmic	92	108	0.53
Transmembrane Helix	109	133	0.82
Non-Cytoplasmic	134	153	0.50
Transmembrane Helix	154	172	0.49
Cytoplasmic	173	246	0.86
Transmembrane Helix	247	265	0.91
Non-Cytoplasmic	266	268	0.66