YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|170711812, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREVVIASAV RTALGSFGGS LKDVPAVDLG ALVIKEALNK AGVKPECVDE VLMGNVIQAG  60
   61 LGQNPARQAA VKAGLPVEIP SMTINKVCGS GLRCVALAAQ MIKAGDADVI VAGGMENMSQ 120
  121 GPYVLRTARF GQRMGDGKMV DAMVNDALTD AFNGYHMGIT AENIAEQWGL TREMQDEFAA 180
  181 NSQIKAEAAI KAGKFKDEIV PVVIPQRKGD PIVFDTDEFP RFGTTAEKLA KLRPAFKKDG 240
  241 TVTAGNASGI NDGAAALVVM SAEKAKELGV TPICKIVSYG SKGLDPSIMG YGPFYATKKA 300
  301 LEGTGLTVAD LDLIEANEAF AAQSLAVAKD LEFDMSKVNV NGGAIALGHP VGASGARILV 360
  361 TLLHEMMKRD AKRGLATLCI GGGMGTALIV ER

Type	Start	End	Confidence
Signal Peptide	1	15	0.48
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	392	0.87