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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18145725, gi|...
Protein type: Transmembrane
Type Confidence: 0.69
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMRKMKTMD GNTAAAYISY AFTDVAAIFP ITPSSPMAEW VDENSARGLK NIFGQPVKVM  60
   61 EMQSEAGAAG AVHGSLQAGA LTTTYTASQG LLLMIPNMYK IAGELLPSVF HVSARALATS 120
  121 ALNIFGDHQD VMAARQTGFA MLAEGSVQEV MDLSAVAHLA ALKARIPFVN FFDGFRTSHE 180
  181 IQKVELLQYD ELKELVDMEA VEEFRRRALN PNKPVTRGTA QNPDIYFQER EAVNKFYDAV 240
  241 PEIVESYMKE ITKLTGREYN CFDYYGAADA ERVIVAMGSV TDLIEETVDY LNAKGEKVGL 300
  301 IKVRLFRPFS NERLIKAMPK TVKKVAVLDR TKEPGAAGEP LYLEVKNAFY GLENAPVIVG 360
  361 GRFGLGSKDT VPADIVAVYE NLNKEDAKNG FTLSIVDDVT NTSLEPVGDI DTTPEGTKAC 420
  421 KFWGLGSDGT VGANKSAIKI IGDHTDMYAQ GYFAYDSKKS GGVTISHLRF GKQPIKSPYL 480
  481 INKADFVACH NQSYVNKYFV LDGLKKNGTF LLNTIWTPEE VAEHLPASYK RFLAENNIKF 540
  541 YTLNAVKIAQ EVGLGGRINM IMQSAFFKLA NIIPVEDAVK YLKDAVVTSY GKKGEKVVNM 600
  601 NHAAIDKGID AIVEITVPAE WANAKDEVVE AKEVPAFIKN IVEPMNRLEG DKLPVSAFNG 660
  661 MEDGTFEPGT AAYEKRGIGI NIPEWIADNC IQCNQCAYVC PHATIRPFLL TEEEAKNAPA 720
  721 STKLVAAKAL KTEEPMQFTM AVSTLDCTGC GNCAQVCPAK EKALVMKPQH TQEDQIEAWD 780
  781 YCVNDVVPKK NPMNKNTVKG SQFEQPLFEF SGACAGCGET PYAKLITQLF GDRMMIANAT 840
  841 GCSSIWGGSA PSTPYTTNHN GHGPAWANSL FEDNAEFGLG MFLGVKAIRE RLVDLAGKAI 900
  901 EAGVKPEAKE ALEAWIAEVD NGEGTRDRAD AVVAALQGET NEFAKEILKD QDYLAKRSQW 960
  961 IFGGDGWAYD IGYGGVDHVL ASGEDVNILV MDTEIYSNTG GQASKSTPTA AIAKFAAAGK1020
 1021 RTKKKDLGMM AMSYGYVYVA QIAMGADKNQ TLKAIAEAEA YKGPSLIIAY APCISHGLKA1080
 1081 GMGNSQLEEK RAVECGYWAM YRFNPMLKET GKNPFSLDSK EPTGDFREFI MGEVRYAALA1140
 1141 KAFPEAAEAL FEKTERDAKE RLENYKKLAA N

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle