YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110683482, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVRKLIDSF NYAIDGIIYA LRTQRNMRIH FIVALIILSA CFVYDISKIE FIILAITITM  60
   61 VIAAELVNTA IESAIDLSTN YYHPLAKIAK NTAAGAVLIT AINSVLVGYI IFWDELTNIT 120
  121 FRIMDRVKET EPYIIFIVLA IVCIVVVAAK AYFGEGTPLK GGMPSGHSAI AFSIATAISL 180
  181 ISNSHIIIIL SYLMALITAQ SRVDSEVHSV WEVIAGAILG TLITILIFKI FS

Type	Start	End	Confidence
Cytoplasmic	1	26	0.75
Transmembrane Helix	27	46	0.89
Non-Cytoplasmic	47	50	0.52
Transmembrane Helix	51	71	0.70
Cytoplasmic	72	91	0.40
Transmembrane Helix	92	113	0.94
Non-Cytoplasmic	114	132	0.43
Transmembrane Helix	133	154	0.94
Cytoplasmic	155	168	0.41
Transmembrane Helix	169	196	0.81
Non-Cytoplasmic	197	207	0.42
Transmembrane Helix	208	231	0.87
Cytoplasmic	232	232	0.45