YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18144878, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.98
Transmembrane Helix	12	35	0.91
Non-Cytoplasmic	36	77	0.89
Transmembrane Helix	78	99	0.90
Cytoplasmic	100	106	0.82
Transmembrane Helix	107	127	0.94
Non-Cytoplasmic	128	133	0.68
Transmembrane Helix	134	155	0.90
Cytoplasmic	156	165	0.76
Transmembrane Helix	166	187	0.95
Non-Cytoplasmic	188	205	0.88
Transmembrane Helix	206	228	0.92
Cytoplasmic	229	259	0.85
Transmembrane Helix	260	283	0.89
Non-Cytoplasmic	284	296	0.73
Transmembrane Helix	297	316	0.91
Cytoplasmic	317	325	0.69
Transmembrane Helix	326	345	0.91
Non-Cytoplasmic	346	352	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNLSWRKDK KVFIAVLLIL LFISSIILGI SFGAVDIPPY DVYRVFLYKV FGIKIGNLDE  60
   61 ILNSTLFDII WGVRMPRVLL GAFAGMALAM VGVIMQATIQ NPLGDPYILG LSSGASLGAT 120
  121 FSILIGFSGV LSSFGAPLGA FLGALIASIF VYFLAKIGGR ITPFKMILAG MVISSICSSL 180
  181 TSLIIFLSKD NEGIRTVNFW MMGSLAGAQW SNIVLPIAIS VIPLIYFFTQ YRNLNLMVLG 240
  241 DETSITLGLN IEKHRKIYMI LSSLITGVIV SVCGTIGFVG IMIPHIVRLI FGTDHKTLLP 300
  301 FSALVGAIFL IWADVIARCA INNMELPIGI ITSVIGAPFL LWLMVKGTRE KE