YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBD_CLOPE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKIIIGYVL DLIIGDPNNP YHPIRYIGKL ASNMEKLWRK VFKKNLKIAG FFAWLFIVFI  60
   61 TFGVTLGIVH IANKINPILG TVVSGILIYF CISAKGLKVE GLKVIKILKE GDIVKARKQL 120
  121 SYIVGRDTEN LDEEAIVRAV VETVAENMSD GIIAPLFFAG IGGAPLAFLY KAVNTCDSMF 180
  181 GYKNEKYKDF GFFSAKLDDV FNYIPARLTA YLIVISSFIL RLNCKNIFKI YKRDRYNHSS 240
  241 PNSAHPEAAV AGALGIRLGG ANYYFGKLVE KPTIGDAKKK IEISDVYKTN NILGMVSFLG 300
  301 MVVALIIRCI LEVII

Type	Start	End	Confidence
Cytoplasmic	1	47	0.98
Transmembrane Helix	48	71	0.91
Non-Cytoplasmic	72	77	0.77
Transmembrane Helix	78	97	0.93
Cytoplasmic	98	151	0.96
Transmembrane Helix	152	172	0.89
Non-Cytoplasmic	173	202	0.93
Transmembrane Helix	203	224	0.83
Cytoplasmic	225	288	0.75
Transmembrane Helix	289	311	0.84
Non-Cytoplasmic	312	315	0.56