YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18309596, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNINDIPIK SECSKEKSYL FYNVAKRCFD LICSLIALIL FSPIFLILYI WVKVDSKGPA  60
   61 FFGHKRIGKD RKYIDVYKFR SMVSNAKEVF DNFTPEQKAE FEKNFKLDDD PRITKCGAFL 120
  121 RKTSLDELPQ LINIIKGDMS IVGPRPIVDK EVEKYGEYAD KLFSVTPGLT GYWQANGRSD 180
  181 TTYEERVQMD MYYIDNRSLW LDIKIIFKTV ISVIKKEGAV

Type	Start	End	Confidence
Cytoplasmic	1	30	0.75
Transmembrane Helix	31	52	0.93
Non-Cytoplasmic	53	220	0.81