YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18144243, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	302	0.63
Transmembrane Helix	303	324	0.90
Cytoplasmic	325	342	0.59
Transmembrane Helix	343	365	0.88
Non-Cytoplasmic	366	384	0.57
Transmembrane Helix	385	404	0.91
Cytoplasmic	405	420	0.59
Transmembrane Helix	421	444	0.87
Non-Cytoplasmic	445	457	0.53
Transmembrane Helix	458	480	0.83
Cytoplasmic	481	498	0.39
Transmembrane Helix	499	523	0.76
Non-Cytoplasmic	524	534	0.48
Transmembrane Helix	535	554	0.56
Cytoplasmic	555	560	0.69
Transmembrane Helix	561	583	0.87
Non-Cytoplasmic	584	600	0.80
Transmembrane Helix	601	621	0.96
Cytoplasmic	622	630	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISQLLSLD TIKLDLAASN KNEVIDQLVD VLWDAGKLTD KNLYKEEILK RESLSSTGIG  60
   61 ERIAIPHAKT KAVKNASLAL GIYKYGVDYD SLDGEPVNIV FMIAAPAGAN DEHLETLSRL 120
  121 SVLLMNPDFK NGLLNAKTPK EVISLLDKFE ENEESDENKD SNETENNSNK KYILAVTACP 180
  181 TGIAHTYMAA DSLNKTAKEM DVHIKVETNG STGVKNRLTQ EDIDKADGII VAADKQVEMA 240
  241 RFNGKKVVIV PVVQAMKRPQ ELINEALSGS APVYSHSGDS SNQSSGKTER RGFYKHLMNG 300
  301 VSNMLPFVVG GGILIAISFM FGIHSAEIND PTFNPIAKLL KDIGGGNAFF LMIPVLAGFI 360
  361 GSSIADRPGF APAMVGGLIA YNSNSGFLGG LIAGFLGGYV VVFLKKIFSK LPQSLEGIKP 420
  421 VLLYPLFGIL ITGALMYLVI VGPVTALNNS ITMWLQNMGT GNLVILGIVL GGMMAIDMGG 480
  481 PINKAAFTFG IAMISSGNYY PHAAIMAGGM VPPLATALAT TFFKNKFTKD ERDAGATNYI 540
  541 MGLTFITEGA IPFAAADPLR VIPACVIGSA LAGGLSMIFK IGLPAPHGGI LVVPVVEGNP 600
  601 LLYILSILVG SVVAALIIGF LKKPVNEINK