YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229691260, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASGEISTP RDYIGHHLNH LQLDLRTFEL VNPHSTGPAT FWTLNIDSLF FSVVLGLAFL  60
   61 LVFRKVAASA TSGVPGKLQT AVELIIGFVD NSVRDMYHGK SKVIAPLALT VFVWVLLMNM 120
  121 MDLLPIDLLP YIGEHVFGLP ALRVVPTADV SITLSMALGV FILIIFYSIK MKGVGGFTKE 180
  181 LTMQPFNHPI FIPVNLILEG VSLLSKPLSL GLRLFGNMYA GELIFILIAG LLPWWSQWML 240
  241 SVPWAIFHIL IITLQAFIFM VLTIVYLSMA SEEH

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.88
Transmembrane Helix	41	63	0.85
Cytoplasmic	64	102	0.89
Transmembrane Helix	103	124	0.88
Non-Cytoplasmic	125	146	0.82
Transmembrane Helix	147	169	0.90
Cytoplasmic	170	214	0.82
Transmembrane Helix	215	236	0.89
Non-Cytoplasmic	237	243	0.76
Transmembrane Helix	244	267	0.92
Cytoplasmic	268	274	0.73