YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|165926179, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSPDAKVRV QNFGRFLSNM VMPNIGAFIA WGIITALFIP TGWLPNETLA KLVGPMITYL  60
   61 LPLLIGFTGG RLVGGDRGGV VGAITTMGVI VGADMPMFLG AMIVGPLGGW AIKHFDRWVE 120
  121 GKIKSGFEML VNNFSSGIIG MLLALLAFMA IGPLVEVLSK GLAYGVDVMV QNNLLPLASI 180
  181 FVEPAKILFL NNAINHGIFS PLGVQQAAET GKSIFFLIEA NPGPGLGVLM AYMFFGKGNA 240
  241 KQSAGGAAII HFFGGIHEIY FPYVLMNPRL LLAVILGGMT GVFTLTLLNG GLVSAASPGS 300
  301 ILAILAMTPK GAYFANIAAV ATAFAVSFVV SAILLKSSKA KDDEEGLEGA TRRMQDMKAQ 360
  361 SKGVQAANAA AAAGDLSTVR KIIVACDAGM GSSAMGAGVL RKKVQDAGLK HIAVTNCAIN 420
  421 NLPEDVDLVI THRDLTERAM RHAPQAQHIS LTNFLDSQLY NSLTAELLQA SQLVDNTKVQ 480
  481 KVIEKLDDSF EAFEDNLFKL GAENIFLNQH ATAKEQAIRF AGEQLVKGGY VEPEYVEAML 540
  541 DREKLSSTYL GESIAVPHGT IEAKDRVLKT GVVFCQYPEG VRFGDEEDDV ARLVIGIAAR 600
  601 NNEHIQVITS LTNALDDDSV IARLSKTTSV QEVLDLLGGK TSA

Type	Start	End	Confidence
Cytoplasmic	1	19	0.68
Transmembrane Helix	20	42	0.88
Non-Cytoplasmic	43	51	0.59
Transmembrane Helix	52	74	0.82
Cytoplasmic	75	80	0.55
Transmembrane Helix	81	108	0.77
Non-Cytoplasmic	109	133	0.62
Transmembrane Helix	134	155	0.88
Cytoplasmic	156	213	0.49
Transmembrane Helix	214	235	0.79
Non-Cytoplasmic	236	242	0.48
Transmembrane Helix	243	264	0.81
Cytoplasmic	265	269	0.48
Transmembrane Helix	270	296	0.80
Non-Cytoplasmic	297	311	0.46
Transmembrane Helix	312	335	0.89
Cytoplasmic	336	643	0.54