YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|150261077, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQFDVVVIG AGAAGLFCAA QAGQAGCRVL LVDNGKKAGR KILMSGGGRC NFTNIYTEPA  60
   61 AYLSQNPHFC KSALARYTQW DFIDLMNRHN IAWHEKTLGQ LFCDDSAQQV VDLLLKECEL 120
  121 GNVTVRLRSN VLSVEKSDTG FVLHINDLRV SANSLVVASG GLSMPGLGAS PFGYKLAEQF 180
  181 GLKVLPTRAA LVPFTLHKPL LDHVQTLSGV SVPAVVTAEN GVSFRESILF THRGLSGPAI 240
  241 LQLSSYWQAG EYVSINLLPD VDLAAFLNTE RQAHPNQTLK NTLAQLLPKR LVECLQTLEQ 300
  301 LPDVTLKQLN VPQQAALIAN LQQWRVQPNG TEGYRTAEVT LGGVDTQELS SKTMEAHKVP 360
  361 GLYFIGEVVD VTGWLGGYNF QWAWSSAWAC AQGLAAKK

Type	Start	End	Confidence
Signal Peptide	1	22	0.93
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	398	0.98