YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16123836, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	121	0.98
Transmembrane Helix	122	142	0.92
Non-Cytoplasmic	143	169	0.88
Transmembrane Helix	170	189	0.93
Cytoplasmic	190	197	0.75
Transmembrane Helix	198	219	0.88
Non-Cytoplasmic	220	237	0.92
Transmembrane Helix	238	256	0.88
Cytoplasmic	257	265	0.76
Transmembrane Helix	266	289	0.92
Non-Cytoplasmic	290	309	0.77
Transmembrane Helix	310	332	0.83
Cytoplasmic	333	351	0.70
Transmembrane Helix	352	373	0.89
Non-Cytoplasmic	374	381	0.66
Transmembrane Helix	382	402	0.69
Cytoplasmic	403	410	0.79
Transmembrane Helix	411	434	0.86
Non-Cytoplasmic	435	449	0.82
Transmembrane Helix	450	472	0.94
Cytoplasmic	473	483	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRARNLYGKD DKMGKVKQQD IDQLIVLVGG RENIATVSHC ITRLRFVLKD PSIASPKEIE  60
   61 NLSMVKGCFT NAGQFQVVIG PEVDDYYKAL IAKIGQSEVD KEQTKLAARQ NMTWFERGIS 120
  121 HFAEIFFPLL PALISGGLIL GFRNVIGDIP MSEGKTLAQM YPAWQTIYDF LWLLGEAIFF 180
  181 YLPVAICWST VKKMGGTPVL GIVLGITLVS PQLMNSYLLG QQLPDVWNFG WFTIEKVGYQ 240
  241 AQVIPSILAG LALGWIETNL KRIIPAYLYL VVVPVVSLLL AVFLAHTLIG PFGRMIGDGV 300
  301 AWGVKAVMTG SFAPVGAALF GFLYAPLVIT GVHQTTLAID MQMVQSMGGT PVWPLIALSN 360
  361 IAQASAVLGI IIISRKINER EISVPAAISA YLGVTEPAMY GINLKYRFPM LCAMIGSALA 420
  421 GLICGLTGVM ANGIGVGGLP GILSIQPQFW GIYAVAMLVA IVVPLALTIL VYKRKERRGE 480
  481 LPV