YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|167420785, gi...
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSILLILF LIAVSAFFSL SEISLAASRK IKLKLLADEG DTNALRVLKL QETPGMFFTV  60
   61 VQIGLNAVAI LGGIVGDAAF SPSFKLVFER FMAPELADQA SFVCSFVLVT SLFILFADLT 120
  121 PKRIGMISPE AVAVRIVNPM RFCLMIFRPL VWFFNGMANL IFRLFKLPMV RNDDITSDDI 180
  181 YAVVEAGALA GVLRKQEHEL IENVFELESR TVPSSMTSRE NVIYFDLRES EDSIKDKIST 240
  241 HPHSKFLVCD GHIDQVVGYV DSKDLLNRVL GNQSLVLSSG VQIRSALIVP DTLTLSEALE 300
  301 SFKTAGEDFA VILNEYALVV GIITLNDVMT TLMGDLVGQG QEEQIVARDE NSWLIEGGTP 360
  361 IEDVMRVLHI DDFPQSGNYE TIGGFMMYML RKIPKRTDFV KYAGYKFEVV DIDSYKIDQL 420
  421 LVTRLSDQPA PILPKAPHES SDA

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.62
Transmembrane Helix	6	26	0.67
Cytoplasmic	27	54	0.67
Transmembrane Helix	55	79	0.77
Non-Cytoplasmic	80	98	0.70
Transmembrane Helix	99	119	0.88
Cytoplasmic	120	139	0.68
Transmembrane Helix	140	162	0.75
Non-Cytoplasmic	163	443	0.79