YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|162354357, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.89
Transmembrane Helix	11	32	0.85
Non-Cytoplasmic	33	50	0.84
Transmembrane Helix	51	71	0.95
Cytoplasmic	72	79	0.85
Transmembrane Helix	80	97	0.96
Non-Cytoplasmic	98	104	0.59
Transmembrane Helix	105	127	0.87
Cytoplasmic	128	137	0.85
Transmembrane Helix	138	160	0.91
Non-Cytoplasmic	161	165	0.87
Transmembrane Helix	166	188	0.91
Cytoplasmic	189	198	0.89
Transmembrane Helix	199	219	0.92
Non-Cytoplasmic	220	230	0.85
Transmembrane Helix	231	250	0.94
Cytoplasmic	251	268	0.88
Transmembrane Helix	269	290	0.92
Non-Cytoplasmic	291	301	0.78
Transmembrane Helix	302	323	0.91
Cytoplasmic	324	333	0.81
Transmembrane Helix	334	352	0.95
Non-Cytoplasmic	353	367	0.89
Transmembrane Helix	368	389	0.91
Cytoplasmic	390	478	0.62
Transmembrane Helix	479	498	0.93
Non-Cytoplasmic	499	511	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKPLEGAP LAWMTVALSL ATFMQVLDST IANVAIPTIA GDLGSSNSQG TWVITSFGVA  60
   61 NAISIPVTGW LAKRVGEVRL FLWSTGLFVL ASWLCGMSNS LGMLIFFRVI QGLVAGPLIP 120
  121 LSQSLLLNNY PPAKRSMALA LWSMTIVVAP IFGPILGGYI SDNYHWGWIF FINIPIGLVV 180
  181 VLLAGSTLKG RETKTEIRPI DTIGLVLLVV GIGALQIMLD QGKELDWFNS TEIIVLTVVA 240
  241 VVAITFLIVW ELTDDHPVID LSLFKSRNFT IGCLCLSLAY MLYFGAIVLL PQLLQEVYGY 300
  301 TATWAGLASA PVGILPVLLS PLIGRFAHRI DMRQLVTFSF IMYAVCFYWR AYTFEPGMDF 360
  361 GASAWPQFFQ GFAIACFFMP LTTITLSGLP PERMAAASSL SNFMRTLAGS IGTSITTTLW 420
  421 TQRESLHHAQ LTEFVNPYNP NATQAYQELE KLGMSQQQAS AYLAREITNQ GLIISANEIF 480
  481 WLSAGVFLML LALIWFARPP FTSGGGGGGA H