YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77635307, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPLNGPGVP IGNDRHITPT KLTAQSTVED QALTPAQRTT LEKLIVRIMA LSPVKSAEIW  60
   61 AGLRHNLSLD ATGDLLARHF QPAEQLLQTR LSQAQENHAS QQLRQQLTAL LPQGNNRQAV 120
  121 SDFIRQQFGH TVLSQLSHTE LQQVLVLLQS GTLNIPQPQL TTLTDRPLLP AEHQNIQSLV 180
  181 AKLSAATGEQ PTKIWQTLFD MVGVKHHDPL PARHFQLLSQ FLQTKVALSQ QTAPTLVNLQ 240
  241 TALKQPADAQ EQQLLADYSQ NRFQASPTTP LTQAQLNDII NILFAARLEK ANAAQYLDEE 300
  301 HKPLQPLINP FIASLPESLQ PLLQKPSLVV VALIIVIAFL LAIFL

Type	Start	End	Confidence
Non-Cytoplasmic	1	321	0.82
Transmembrane Helix	322	344	0.86
Cytoplasmic	345	345	0.81