YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|167467739
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.87
Transmembrane Helix	25	42	0.85
Non-Cytoplasmic	43	62	0.86
Transmembrane Helix	63	86	0.81
Cytoplasmic	87	93	0.91
Transmembrane Helix	94	115	0.90
Non-Cytoplasmic	116	123	0.67
Transmembrane Helix	124	144	0.94
Cytoplasmic	145	152	0.87
Transmembrane Helix	153	175	0.92
Non-Cytoplasmic	176	187	0.84
Transmembrane Helix	188	208	0.94
Cytoplasmic	209	252	0.96
Transmembrane Helix	253	274	0.93
Non-Cytoplasmic	275	285	0.88
Transmembrane Helix	286	307	0.94
Cytoplasmic	308	318	0.86
Transmembrane Helix	319	338	0.93
Non-Cytoplasmic	339	341	0.90
Transmembrane Helix	342	364	0.89
Cytoplasmic	365	369	0.73
Transmembrane Helix	370	394	0.80
Non-Cytoplasmic	395	408	0.82
Transmembrane Helix	409	431	0.90
Cytoplasmic	432	436	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESSTESLS QPTQLQEENN AYRKTVWHLL PLLMLCYVLN YLDRVNVGFA KLQMADDLQF  60
   61 SDTVYGLGAG MFFIGYFFLE IPSNLILHRV GARLWIARIM ITWGIISACM AFVTTPMSFY 120
  121 VMRFLLGVAE AGFFPGIILY ISYWFPSHRR GRVYGLFVIS VPLSGIIGAP LSGWIMQYFN 180
  181 GFQGYAGWQW MFILEGIPSV LVGILIIYKL KDRITHATWL TDKEKDILQT NIENEAAHYA 240
  241 HSRLRDAFLQ PRVWLLTLIY FCLISGFYTI GFWLPTLIRD SGVKDILSIG FLTAIPSAAA 300
  301 AVTMIVVSRS ADRLRERRWH LALTAVLGAV GIILSTYFSD NIVVAMVCLT IGAMGALSTI 360
  361 PLFWSLPTAF LGGSAAAAGI AFINSWGNLG GFVAPYMMGY LKDLTQSTTT GMLIISTTLF 420
  421 IGAALVFLIP AKAVNH