YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15979972, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGHAAYYGV LGQMNRGALW EGKYPTCAVV YNNVIYIAML FAALLLFLNN GYHFSDDIKR  60
   61 EHSVKQNPFG QTIGAELPYW HLARPPQREI IPGHFCSLEP VSADKHEASL YQAYHAVSDG 120
  121 QDWTYFYCER PENKDDFHHY LQTLIHANDA VHYTAVDPQL GHALGTVGLQ RIDEKNGVIE 180
  181 IGSVNWSPRL KRNTAGTEAI YLLLHYAFDK LGYRRCEWKC DSLNESSNAA AARFGFQYEG 240
  241 QFRQAIVTKG RNRDTNWYAI IDKDWPLIKQ AFKDWLMAEN FDSQGKQKVR LQDLRGRHS

Type	Start	End	Confidence
Cytoplasmic	1	27	0.54
Transmembrane Helix	28	48	0.70
Non-Cytoplasmic	49	299	0.77