YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77634269, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	384	0.99
Transmembrane Helix	385	405	0.92
Cytoplasmic	406	414	0.89
Transmembrane Helix	415	439	0.85
Non-Cytoplasmic	440	446	0.95
Transmembrane Helix	447	468	0.92
Cytoplasmic	469	486	0.88
Transmembrane Helix	487	505	0.94
Non-Cytoplasmic	506	526	0.89
Transmembrane Helix	527	549	0.91
Cytoplasmic	550	559	0.80
Transmembrane Helix	560	580	0.90
Non-Cytoplasmic	581	611	0.92
Transmembrane Helix	612	632	0.92
Cytoplasmic	633	639	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIWQKFLLL FCCWVLSGPL VWASTDYSLW VNDIQSRLDK TAQLYQQQKT DEARAMVQMA  60
   61 YFEVFENLEG PIRINISAQK SFQMEAAFGE IRRMIGEGKS QADVDNKINW LKGELTGVLP 120
  121 VLVDGHKLTA EQQHAAYENS DIAVYWQQSF RIIDDLLAQA ISEYQDGKYA EASKSVQQAH 180
  181 YQGFKNSEME MSVRGNRSAQ QAAEINQQFT ALIDLARQPD KMTEVAYRVT GLLHTIEDIL 240
  241 PGLPTTREQQ QITVDQPISS DAIPDTQANA DWAQVSSKIN QAVTEAIGQY QQGKITPAMM 300
  301 AVQDAYFDLF EASGMENKVG SRDAAFKSTL EGHFTRLVGL MKAEKPVEQL QAEAVALQKD 360
  361 LVNAAEMLGD GGETDWSLFV YSLLIIVREG LEALLIVAAI VAYLVKNNHQ DKLPLIRQSV 420
  421 VVALIASVLT AFIFQWLFAN SGQSRELLEG FTMMIAVVML FSMSYWLLSK AEARNWKAYL 480
  481 EGKFAKSLSS GSIIGLWLTS FLAVYREGAE TVLFYLALIG DANTTSGHLS VLAGFGVGCV 540
  541 ILLVAYLVMR FTVVKLPLKP FFIFTGGFMY LMAFVFAGKS VLELIEGKLF EPTLLPGVPE 600
  601 ISWLGIYPYV ETLIPQGVLL IAALVALWVM QWRSRTVHR