YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25283028
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKTRAAVAW GPNQPLSVEE VDLMPPQKGE VLVRIVASGV CHTDAYTLSG ADPEGVFPTI  60
   61 LGHEGGGIVE AIGEGVTSVA VVDHVIPLYT PECGECKYCR SGKTNLCQAI RSTQGKGLMP 120
  121 DGTTRFSKNG QPIFHYMGTS TFSELTVVPE ISLAKINKEA PLEEVCLLGC GVTTGMGAVM 180
  181 NTAKVKPGDT VAIFGLGGIG LSAVIGAQMA GASRIIGIDL NTSKFELARK LGATDLINPK 240
  241 DYDKPIQEVI VELTDGGVDF SFECIGNVNV MRSALECCHK GWGESVIIGV AGAGEEISTR 300
  301 PFQLVTGRVW RGSAFGGVKG RSELPGIVQQ YLDGKFALND FITHTMALDQ INEAFDLMHE 360
  361 GKSIRSVIHF NHSSESK

Type	Start	End	Confidence
Cytoplasmic	1	189	0.56
Transmembrane Helix	190	212	0.61
Non-Cytoplasmic	213	377	0.63