YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25288701
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYRLITAL ILIPVVIGAL FLLPPVGFAI VTLVVCMLAA WEWGQLAGFA SRTQRIWLAI  60
   61 LCGFLLVAML LSLPEYQHSP HHLLVSTPLW LSMGWWVAAL MLVLTYPRSA VSWRNSRLLR 120
  121 IIFGILTIIP FFWGMFALRQ YGYEQNHNTG AWWLLYVMLL VWGADSGAYM FGKLFGKHKL 180
  181 APKVSPGKTW EGLIGGLLTS ALISLLFGRY APLDIVPEKL LICSVVAALA SVLGDLTESM 240
  241 FKREAGIKDS GHLIPGHGGI LDRIDSLTAA VPVFACLMLL VF

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.44
Transmembrane Helix	7	41	0.81
Cytoplasmic	42	55	0.68
Transmembrane Helix	56	74	0.95
Non-Cytoplasmic	75	85	0.77
Transmembrane Helix	86	106	0.89
Cytoplasmic	107	117	0.83
Transmembrane Helix	118	137	0.94
Non-Cytoplasmic	138	151	0.81
Transmembrane Helix	152	172	0.94
Cytoplasmic	173	189	0.89
Transmembrane Helix	190	211	0.89
Non-Cytoplasmic	212	219	0.72
Transmembrane Helix	220	237	0.82
Cytoplasmic	238	260	0.77
Transmembrane Helix	261	281	0.52
Non-Cytoplasmic	282	282	0.50