YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|165992017, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTIKLANPG PLGLMGFGMT TVLLNLHNAG FFPLSSVILS MGIFYGGLAQ ILAGLLEYKK  60
   61 GNTFAATAFT SYGAFWLSLV GLLMLPKMGL ADATDAQFLG VYLGLWGIFT LFMFIGTLPA 120
  121 NRALQFVFGS LTILFALLAV GNFTDNHTLL MFAGFEGIIC GASAIYLAMA EVLNEQYGRT 180
  181 ILPIGEPLPI GEPSQTLETQ AVM

Type	Start	End	Confidence
Cytoplasmic	1	8	0.79
Transmembrane Helix	9	27	0.84
Non-Cytoplasmic	28	33	0.58
Transmembrane Helix	34	56	0.86
Cytoplasmic	57	63	0.82
Transmembrane Helix	64	85	0.89
Non-Cytoplasmic	86	97	0.70
Transmembrane Helix	98	116	0.95
Cytoplasmic	117	123	0.73
Transmembrane Helix	124	143	0.92
Non-Cytoplasmic	144	148	0.80
Transmembrane Helix	149	170	0.90
Cytoplasmic	171	203	0.91