YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117674929, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPKKNHNSA EKLPTLAGVL RRIHLSVAIV SVVTACIFLT VAALFALRVY VDHNLHLIAR  60
   61 AISYTTEAAV VFGDNVEANE LLALIASNEE VAEAKIIDKH NRQIAYWALP DDGPIHHMEQ 120
  121 IVARWILPAP VVLPMFHAGD EIGKIVIVGH GGSLLRFLLQ GLAGMLACLT VSTLVALFLS 180
  181 RRMLLGIVGS LKRITEVAHN VSRHRSFGQR VPSAKVAELN ELSNDFNGLL EELEVWQKHL 240
  241 TQENDSLAYR AAHDSLTGLA NRTFFEGRLS RTLNDCQPGE HTAVLFLDGD HFKDVNDNYG 300
  301 HAAGDLVLTT IAVRIRALLR ETDLVARLGG DEFAVLLTPI HNLDDVLTIA DHIIDSMALP 360
  361 IILAEGCEIT VSLSIGIAVY PDHAQTPEKL LQRADEAMYQ AKKNFRSGKR IFAYQPNTTN 420
  421 TESLG

Type	Start	End	Confidence
Cytoplasmic	1	22	0.78
Transmembrane Helix	23	47	0.86
Non-Cytoplasmic	48	156	0.72
Transmembrane Helix	157	179	0.90
Cytoplasmic	180	425	0.64