YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21956729, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINSLTTRIF AIFWFTLALV LMLVLMVPKL DSRQLTVLLD SEQRQGTMLE QHIEAELAND  60
   61 PANDLMWWRR LHRAIEKWAP PGQHLILVTS EGRIIGVQRQ EVQMVRNFIG QSDNADQPKK 120
  121 KKYGRVEMVG PFSIRDGEDN YQLYLIRPAN SPQSDFINLM FDRPLLLLIA TMLISAPLLL 180
  181 WLAWSLAKPA RKLKNAADDV ARGNLKQHPE LESGPQEFLA TGASFNQMIS SLDRMVVAQQ 240
  241 RLISDISHEL RTPLTRLQLA TALMRRRHGE GKELERIEME AQRLDSMIND LLVLSRSQHK 300
  301 NELHREPIKA DELWSDVLEN AQFEAEQMGK TLVVTAPPGP WPLFCNPAAL DSALENIVRN 360
  361 ALRYSHHHIA VAFSIDNQGV TIIVDDDGPG VSPEDREQIF RPFYRTDEAR DRASGGTGLG 420
  421 LAIVETAVSQ HRGWVKAEDS PLGGLRLIVW LPLHPLKS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.58
Transmembrane Helix	9	28	0.79
Non-Cytoplasmic	29	164	0.77
Transmembrane Helix	165	184	0.93
Cytoplasmic	185	458	0.74