YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221230012, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPGFDPLPE ALRPVTKPRL YTPHVHPIFP PLTEPLVDCG VYVGGHRLPD KYTTYTAALS  60
   61 RVREIELMGN EGFVWIGLHE PEASHMHNVA DVFGLHPLAV EDAVHAHQRP KLERYDDTLF 120
  121 LVLKTVNYVP HESVVLARQI VETGEVMIFV GKNFVVTVRH GEHGELSEVR KRMDTDPEHL 180
  181 RLGSYAVMHA ISDYVVDRYL AVTNLMEGDI DAIEEVAFAP GRKLNVEPIY LLKREVIELR 240
  241 RCVAPLSAAL QRMQTDNKDL ISKELRRYLR DVADHQTEAA DQIASYDDML NSLVQAALAR 300
  301 VGMQQNNDMR KMAAWAGIVA MPTMVAAIYG MNFRFMPELN WTWSYPLVMA GMTIVCLVLY 360
  361 WQFRNRNWL

Type	Start	End	Confidence
Cytoplasmic	1	311	0.88
Transmembrane Helix	312	333	0.91
Non-Cytoplasmic	334	341	0.77
Transmembrane Helix	342	363	0.93
Cytoplasmic	364	369	0.86