YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221229838, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSSTSLPP LVEPAGQLSR DEVIRYSRHL IIPDIGVDGQ MRLKSARVLV IGAGGLGAPV  60
   61 LLYLAAAGVG TIGIIDFDVV DESNLQRQII HGVADVGRSK AQSARDSIVA INPLVQVRLH 120
  121 EFRLESSNVV NLFKQYDLIV DGTDNFATRY LINDAAVLAK KPYVWGSLYR FEGQVSVFWE 180
  181 DAPDGLGLNY RDLYLEPPPP GMVPSCAEGG VLGIVCASIA SVMGTEAIKL ITGIGAPLLG 240
  241 RLMIYNALEM SYRRIRIHKD PSRPKITELT DYQQFCGVVS DDAAQVATGS IVTPRELREL 300
  301 LDSGKKLALI DVREPVEWDI VHIDGAQLIP RSLINSGEGL AKLPQDRMSV LYCKTGVRSA 360
  361 ETLATVKKAG FSDAVHLQGG IVAWAKQVQP DMVIY

Type	Start	End	Confidence
Cytoplasmic	1	47	0.92
Transmembrane Helix	48	70	0.85
Non-Cytoplasmic	71	395	0.81