YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25391967, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQMDSHYLN NTQHVYDKGR VMQTEQQRAV TRLCIQCGLF LLQHGAESAL VDELSSRLGR  60
   61 ALGMDSVESS ISSNAIVLTT IKDGQCLTST RKNHDRGINM HVVTEVQHIV ILAEHHLLDY 120
  121 KGVEKRFSQI QPLRYPRWLV ALMVGLSCAC FCKLNNGGWD GAVITFFAST TAMYIRQLLA 180
  181 QRHLHPQINF CLTAFAATTI SGLLLQHPTF SNTPTIAMAA SVLLLVPGFP LINAVADMFK 240
  241 GHINTGLARW AIASLLTLAT CVGVVMALTI WGLRGWV

Type	Start	End	Confidence
Cytoplasmic	1	134	0.98
Transmembrane Helix	135	154	0.92
Non-Cytoplasmic	155	160	0.73
Transmembrane Helix	161	180	0.88
Cytoplasmic	181	187	0.88
Transmembrane Helix	188	207	0.94
Non-Cytoplasmic	208	215	0.73
Transmembrane Helix	216	236	0.94
Cytoplasmic	237	249	0.82
Transmembrane Helix	250	271	0.94
Non-Cytoplasmic	272	277	0.80