YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|188014804, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLIQGIFM AQVINEMDVP SHSFVFHGTG ERYFLICVVN VLLTIITLGI YLPWALMKCK  60
   61 RYLYANMEVN GQRFSYGITG GNVFFSCLVF VFFYFAILMT VSADMPLIGC VLTLSLLVLL 120
  121 IFMAAKGLRY QALMTSLNGV RFSFNCSMKG VWWVTFFLPI LMAIGMGTVF FISTKMLHAN 180
  181 SSSSVIVSVV LMAIVGIVSI GIFNGTLYSL VMSFLWSNTS FGIHRFKVKL DTAYCIKYAI 240
  241 LAFLALLPFL AVAGYIIFDQ ILNAYDSSVY ANDDIENLQQ FMEMQRKMII AQLIYYFGIA 300
  301 VSTSYLTVSL RNHFMSNLSL NDGRIRFRST LTYHGMLYRM CALVVISGIT GGLAYPLLKI 360
  361 WMIDWQAKNT YLLGDLDDLP LINKEEQPDK GFLASISRGI MPSLPFL

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.83
Transmembrane Helix	33	55	0.94
Cytoplasmic	56	74	0.83
Transmembrane Helix	75	98	0.92
Non-Cytoplasmic	99	104	0.77
Transmembrane Helix	105	128	0.88
Cytoplasmic	129	149	0.83
Transmembrane Helix	150	172	0.94
Non-Cytoplasmic	173	184	0.77
Transmembrane Helix	185	216	0.79
Cytoplasmic	217	233	0.87
Transmembrane Helix	234	258	0.89
Non-Cytoplasmic	259	288	0.94
Transmembrane Helix	289	314	0.81
Cytoplasmic	315	334	0.91
Transmembrane Helix	335	357	0.92
Non-Cytoplasmic	358	407	0.93