YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15804140, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.83
Transmembrane Helix	19	40	0.90
Non-Cytoplasmic	41	47	0.75
Transmembrane Helix	48	69	0.80
Cytoplasmic	70	78	0.63
Transmembrane Helix	79	99	0.84
Non-Cytoplasmic	100	132	0.72
Transmembrane Helix	133	154	0.90
Cytoplasmic	155	166	0.60
Transmembrane Helix	167	189	0.53
Non-Cytoplasmic	190	212	0.49
Transmembrane Helix	213	235	0.82
Cytoplasmic	236	241	0.47
Transmembrane Helix	242	263	0.80
Non-Cytoplasmic	264	268	0.42
Transmembrane Helix	269	292	0.88
Cytoplasmic	293	310	0.39
Transmembrane Helix	311	334	0.89
Non-Cytoplasmic	335	637	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDIKIKVQ SFGRFLSNMV MPNIGAFIAW GIITALFIPT GWLPNETLAK LVGPMITYLL  60
   61 PLLIGYTGGK LVGGERGGVV GAITTMGVIV GADMPMFLGS MIAGPLGGWC IKHFDRWVDG 120
  121 KIKSGFEMLV NNFSAGIIGM ILAILAFLGI GPIVETLSKM LAAGVNFMVV HDMLPLASIF 180
  181 VEPAKILFLN NAINHGIFSP LGIQQSHELG KSIFFLIEAN PGPGMGVLLA YMFFGRGSAK 240
  241 QSAGGAAIIH FLGGIHEIYF PYVLMNPRLI LAVILGGMTG VFTLTILGGG LVSPASPGSI 300
  301 LAVLAMTPKG AYFANIXGVC AAMAVSFVVS AILLKTSKVK EEDDIEAATR RMQDMKAESK 360
  361 GASPLSAGDV TNDLSHVRKI IVACDAGMGS SAMGAGVLRK KIQDAGLSQI SVTNSAINNL 420
  421 PPDVDXVITH RDLTERAMRQ VPQAQHISLT NFLDSGLYTS LTERLVAAQR HTENEVKVKD 480
  481 SLKDSFDDSS ANLFKLGAEN IFLGRKAATK EEAIRFAGEQ LVKGGYVEPE YVQAMLDREK 540
  541 LTPTYLGESI AVPHGTVEAK DRVLKTGVVF CQYPEGVRFG EEEDDIARLV IGIAARNNEH 600
  601 IQVITSLTNA LDDESVIERL AHTTSVDEVL ELLAGRK