YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75197340, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	277	0.94
Transmembrane Helix	278	300	0.87
Non-Cytoplasmic	301	308	0.61
Transmembrane Helix	309	327	0.81
Cytoplasmic	328	336	0.57
Transmembrane Helix	337	363	0.76
Non-Cytoplasmic	364	392	0.79
Transmembrane Helix	393	411	0.87
Cytoplasmic	412	423	0.80
Transmembrane Helix	424	446	0.90
Non-Cytoplasmic	447	452	0.77
Transmembrane Helix	453	475	0.89
Cytoplasmic	476	510	0.96
Transmembrane Helix	511	532	0.85
Non-Cytoplasmic	533	660	0.97
Transmembrane Helix	661	684	0.89
Cytoplasmic	685	691	0.88
Transmembrane Helix	692	714	0.89
Non-Cytoplasmic	715	721	0.78
Transmembrane Helix	722	742	0.94
Cytoplasmic	743	773	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLTIGLIG NPNSGKTTLF NQLTGARQRV GNWAGVTVER KEGQFSTTDH QVTLVDLPGT  60
   61 YSLTTISSQT SLDEQIACHY ILSGDADLLI NVVDASNLER NLYLTLQLLE LGIPCIVALN 120
  121 MLDIAEKQNI RIEIDALSAR LGCPVIPLVS TRGRGIEALK LAIDRYKANE NVELVHYAQP 180
  181 LLNEADSLAK VMPSDIPLKQ RRWLGLQMLE GDIYSRAYAG EASQHLDAAL ARLRNEMDDP 240
  241 ALHIADARYQ CIAAICDVVS NTLTAEPSRF TTAVDKIVLN RFLGLPIFLF VMYLMFLLAI 300
  301 NIGGALQPLF DVGSVALFVH GIQWIGYTLH FPDWLTIFLA QGLGGGINTV LPLVPQIGMM 360
  361 YLFLSFLEDS GYMARAAFVM DRLMQALGLP GKSFVPLIVG FGCNVPSVMG ARTLDAPRER 420
  421 LMTIMMAPFM SCGARLAIFA VFAAAFFGQN GALAVFSLYM LGIVMAVLTG LMLKYTIMRG 480
  481 EATPFVMELP VYHVPHVKSL IIQTWQRLKG FVLRAGKVII IVSIFLSAFN SFSLSGKIVD 540
  541 NINDSALASV SRVITPVFKP IGVHEDNWQA TVGLFTGAMA KEVVVGTLNT LYTAENIQDE 600
  601 EFNPAEFNLG EELFSAVDET WQSLKDTFSL SVLMNPIEAS KGDGEMGTGA MGVMDQKFGS 660
  661 AAAAYSYLIF VLLYVPCISV MGAIARESSR GWMGFSILWG LNIAYSLATL FYQVASYSQH 720
  721 PTYSLVCILA VILFNIVVIG LLRRARSRVD IELLATRKSV SSCCAASTTG DCH