YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YGFQ_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.97
Transmembrane Helix	35	56	0.90
Non-Cytoplasmic	57	62	0.74
Transmembrane Helix	63	83	0.91
Cytoplasmic	84	89	0.68
Transmembrane Helix	90	108	0.93
Non-Cytoplasmic	109	115	0.67
Transmembrane Helix	116	139	0.88
Cytoplasmic	140	146	0.84
Transmembrane Helix	147	169	0.89
Non-Cytoplasmic	170	179	0.80
Transmembrane Helix	180	201	0.94
Cytoplasmic	202	209	0.79
Transmembrane Helix	210	230	0.93
Non-Cytoplasmic	231	260	0.89
Transmembrane Helix	261	282	0.79
Cytoplasmic	283	304	0.85
Transmembrane Helix	305	327	0.69
Non-Cytoplasmic	328	333	0.59
Transmembrane Helix	334	356	0.80
Cytoplasmic	357	361	0.53
Transmembrane Helix	362	383	0.74
Non-Cytoplasmic	384	394	0.79
Transmembrane Helix	395	423	0.86
Cytoplasmic	424	433	0.79
Transmembrane Helix	434	453	0.94
Non-Cytoplasmic	454	455	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDILQTPD APKPQGALDN YFKITARGST VRQEVLAGLT TFLAMVYSVI VVPGMLGKAG  60
   61 FPPAAVFVAT CLVAGFGSLL MGLWANLPMA IGCAISLTAF TAFSLVLGQQ ISVPVALGAV 120
  121 FLMGVIFTAI SVTGVRTWIL RNLPMGIAHG TGIGIGLFLL LIAANGVGMV IKNPIEGLPV 180
  181 ALGAFTSFPV MMSLLGLAVI FGLEKCRVPG GILLVIIAIS IIGLIFDPAV KYHGLVAMPS 240
  241 LTGEDGKSLI FSLDIMGALQ PTVLPSVLAL VMTAVFDATG TIRAVAGQAN LLDKDNQIIN 300
  301 GGKALTSDSV SSIFSGLVGA APAAVYIESA AGTAAGGKTG LTATVVGALF LLILFLSPLS 360
  361 FLIPGYATAP ALMYVGLLML SNVSKLDFND FIDAMAGLVC AVFIVLTCNI VTGIMLGFVT 420
  421 LVVGRVFARE WQKLNIGTVI ITAALVAFYA GGWAI