YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13362880
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCITFKSHYL AKGLVMNSLR YFDFGAARPV LLLIARIAVV LIFIIFGFPK MMGFDGTVQY  60
   61 MASLGAPMPM LAAIIAVVME VPAAILIVLG FFTRPLAVLF IFYTLGTAVI GHHYWDMTGD 120
  121 AVGPNMINFW KNVSIAGAFL LLAITGPGAI SLDRR

Type	Start	End	Confidence
Cytoplasmic	1	28	0.92
Transmembrane Helix	29	48	0.92
Non-Cytoplasmic	49	67	0.78
Transmembrane Helix	68	89	0.87
Cytoplasmic	90	95	0.66
Transmembrane Helix	96	115	0.91
Non-Cytoplasmic	116	132	0.86
Transmembrane Helix	133	152	0.93
Cytoplasmic	153	155	0.90