YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13362616
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETGNLLCG DKQTAQTYRA VAGTGAGLSW SCHGALAAGL AERTGRYCLP DVKSEFCLGD  60
   61 AGCSKTVART GIAASLVWGG VHYWWHCDPR EYGVMGLIWG LFSVIIASVA QLSLGFAASH 120
  121 LPPMTHLWDF IAALLAFGLD ARILLLGLLG YLLSVFCWYK TLHKLALSKA YALLSMSYVL 180
  181 VWIASMVLPG WEGTFSLKAL LGVACIMSGL MLIFLPTTKQ RY

Type	Start	End	Confidence
Cytoplasmic	1	20	0.81
Transmembrane Helix	21	40	0.48
Non-Cytoplasmic	41	65	0.53
Transmembrane Helix	66	85	0.53
Cytoplasmic	86	94	0.86
Transmembrane Helix	95	118	0.89
Non-Cytoplasmic	119	132	0.82
Transmembrane Helix	133	159	0.79
Cytoplasmic	160	169	0.76
Transmembrane Helix	170	188	0.94
Non-Cytoplasmic	189	194	0.77
Transmembrane Helix	195	217	0.89
Cytoplasmic	218	222	0.91