YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254593263, gi...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFWRPGITG KLFLAIFATC IVLLISMHWA VRISFERGFI DYIKHGNEQR LQLLSDALGE  60
   61 QYAQHGNWRF LRNNDRFVFQ ILRSFEHDNS EDKPGPGMPP HGWRTQFWVV DQNNKVLVGP 120
  121 RAPIPPDGTR RPILVNGAEV GAVIASPVER LTRNTDINFD KQQRQTSWLI VALATLLAAL 180
  181 ATFLLARGLL APVKRLVDGT HKLAAGDFTT RVTPTSEDEL GKLAQDFNQL ASTLEKNQQM 240
  241 RRDFMADISH ELRTPLAVLR GELEAIQDGV RKFTPETVAS LQAEVGTLTK LVDDLHQLSM 300
  301 SDEGALAYQK APVDLIPLLE VAGGAFRERF ASRGLKLQFS LPDSITVFGD RDRLMQLFNN 360
  361 LLENSLRYTD SGGSLKISAE QHDKTVRLTF ADSAPGVSDD QLQKLFERFY RTEGSRNRAS 420
  421 GGSGLGLAIC LNIVEAHNGR IIAAHSPFGG VSITVELPLE RDLQREV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.58
Transmembrane Helix	10	31	0.74
Non-Cytoplasmic	32	167	0.83
Transmembrane Helix	168	190	0.82
Cytoplasmic	191	467	0.72