YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13362068, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLILLGYLVV LGTVFGGYLM TGGSLGALYQ PAELVIIAGA GIGSFIVGNN GKAIKGTLKA  60
   61 LPLLFRRSKY TKAMYMDLLA LLYRLMAKSR QMGMFSLERD IENPRESEIF ASYPRIIADS 120
  121 VMLDFIVDYL RLIISGHMNT FEIEALMDEE IETHESEAEV PANSLALVGD SLPAFGIVAA 180
  181 VMGVVHALGS ADRPAAELGA LIAHAMVGTF LGILLAYGFI SPLASVLRQK SAETSKMMQC 240
  241 VKVTLLSNLN GYAPPIAVEF GRKTLYSSER PSFIELEEHV RAVKNPQQQT TTEEA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.75
Transmembrane Helix	7	28	0.87
Non-Cytoplasmic	29	33	0.69
Transmembrane Helix	34	53	0.88
Cytoplasmic	54	166	0.67
Transmembrane Helix	167	190	0.82
Non-Cytoplasmic	191	199	0.55
Transmembrane Helix	200	221	0.92
Cytoplasmic	222	295	0.59