YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13361820
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPCSGNTD CVVTMSIKTI KYFSTIIVAV VAVLAGWWLW NYYMQSPWTR DGKIRAEQVS  60
   61 ITPQVSGRIV ELNIKDNQLV NAGDLLLTID KTPFQIAELN AQAQLAKAQS DLAKANNEAN 120
  121 RRRHLSQNFI SAEELDTANL NVKAMQASVD AAQATLKQTQ WQLAQTEIRA PVSGWVTNLT 180
  181 TRIGDYADTG KPLFALVDSH SFYVIGYFEE TKLRHIREGA PAQITLYSDN KTLQGHVSSI 240
  241 GRAIYDQSVE SDSSLIPDVK PNVPWVRLAQ RVPVRFALDK VPGDVTLVSG TTCSIAVGQ

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	40	0.93
Non-Cytoplasmic	41	299	0.91