YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75234351
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGMFVPFLI MLREGLEAAL IVSLIASYLK RTQRGRWIGV MWIGVLLAAA LCLGLGIFIN  60
   61 ETTGEFPQKE QELFEGIVAV IAVVILTWMV FWMRKVSRNV KVQLEQAVDS ALQRGNHHGW 120
  121 ALVMMVFFAV AREGLESVFF LLAAFQQDVG IWPPLGAMLG LATAVVLGFL LYWGGIRLNL 180
  181 GAFFKWTSLF ILFVAAGLAA GAIRAFHEAG LWNHFQEIAF DMSAVLSTHS LFGTLMEGIF 240
  241 GYQEAPSVSE VAVWFIYLIP ALVAFALPPR AGATASRSA

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.75
Transmembrane Helix	9	29	0.81
Cytoplasmic	30	37	0.90
Transmembrane Helix	38	59	0.95
Non-Cytoplasmic	60	72	0.93
Transmembrane Helix	73	92	0.94
Cytoplasmic	93	119	0.86
Transmembrane Helix	120	143	0.77
Non-Cytoplasmic	144	150	0.88
Transmembrane Helix	151	174	0.89
Cytoplasmic	175	182	0.84
Transmembrane Helix	183	206	0.88
Non-Cytoplasmic	207	250	0.61
Transmembrane Helix	251	273	0.85
Cytoplasmic	274	279	0.49